| Sat 26/07/25 | South Liverpool v Stockport Town * | 0-3 |  |  | | | | |
| Tue 29/07/25 | Abbey Hey v Stockport Town * | 0-3 | | | | | | |
| Sat 02/08/25 | Chadderton v Stockport Town (CUP) * | 2-1 | | | | | | |
| Sat 09/08/25 | Stockport Town v Padiham * | 1-2 | | | | | | |
| Mon 11/08/25 | Stockport Town v Prestwich Heys | 1-1 | | | | | | |
| Sat 23/08/25 | Stockport Town v Selby Town (CUP) | 3-0 | | | | | | |
| Mon 25/08/25 | Atherton LR v Stockport Town | 5-0 | | | | | | |
| Sat 30/08/25 | Stockport Town v Euxton Villa * | 1-1 | | | | | | |
| Sat 06/09/25 | Stockport Town v Litherland REMYCA * | 1-0 | | | | | | |
| Wed 10/09/25 | Pilkington v Stockport Town * | 1-2 | | | | | | |
| Sat 13/09/25 | Ramsbottom United v Stockport Town * | 3-3 | | | | | | |
| Sat 20/09/25 | Stockport Town v Runcorn Town (CUP) * | 0-2 | | | | | | |
| Tue 23/09/25 | Barnoldswick Town v Stockport Town * | 3-3 | | | | | | |
| Sat 27/09/25 | Stockport Town v Prestwich Heys (CUP) | 2-3 | | | |  | | |
| Sat 04/10/25 | Stockport Town v Irlam * | 0-3 | | | | | | |
| Tue 07/10/25 | Glossop North End v Stockport Town | 1-2 | | | | | | |
| Sat 11/10/25 | Wythenshawe v Stockport Town | 2-1 | | | | | | |
| Sat 18/10/25 | Stockport Town v Abbey Hey * | 2-2 | | | | | | |
| Mon 20/10/25 | Stockport Town v City of Liverpool * | 0-2 | | | | | | |
| Sat 25/10/25 | FC St Helens v Stockport Town * | 1-1 | | | | | | |
| Sat 01/11/25 | Stockport Town v Chadderton | 1-1 | | | | | | |
| Mon 03/11/25 | Stockport Town v Burscough | 1-3 | | | | | | |
| Sat 08/11/25 | Stockport Town v Glossop North End * | 1-2 | | | | | | |
| Sat 15/11/25 | Stockport Town v Barnoldswick Town * | 2-0 | | | | | | |
| Mon 17/11/25 | Stockport Town v Warrington Town (CUP) * | 2-0 | | | | | | |
| Sat 22/11/25 | Litherland REMYCA v Stockport Town * | 0-6 | | | | | | |
